ShallowConsensus
This is a blog to demystify encoders in Large Language Model (LLM) transformers as applied to genomics via a simplified gap-aware sequence transformer named ShallowConsensus.
ShallowVariant
This is a blog to illustrate the ideas of a neural network through a simplified variant caller named ShallowVariant.
What do models learn? (Part 1)
This is the first of a multi-part blog trying to dive a bit deeper regarding what machine learning models actually learn from the data that they are being trained on.
